Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPOCK1 ENSBTAG00000003502

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Description

SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:NCBI gene (formerly Entrezgene);Acc:511211]

Location

Primary_assembly 7: 48,366,666-48,947,295 reverse strand.

ARS-UCD1.3:CM008174.2

About this gene

This gene has 6 transcripts (splice variants), 201 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000117611.1	SPOCK1-203	1733	451aa	ENSBTAP00000081527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000132820.1	SPOCK1-204	1706	442aa	ENSBTAP00000087512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000082014.2	SPOCK1-205	1697	439aa	ENSBTAP00000066032.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q17QR9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000122544.1	SPOCK1-202	1671	398aa	ENSBTAP00000085584.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000004556.7	SPOCK1-201	1658	426aa	ENSBTAP00000004556.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MVT9	-
ENSBTAT00000110422.1	SPOCK1-206	1580	400aa	ENSBTAP00000088777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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