Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TTC39A ENSBTAG00000002451

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Description

tetratricopeptide repeat domain 39A [Source:VGNC Symbol;Acc:VGNC:36475]

Location

Primary_assembly 3: 94,953,193-95,004,163 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 6 transcripts (splice variants), 205 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000003183.7	TTC39A-203	3097	672aa	ENSBTAP00000003183.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MNU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000071792.2	TTC39A-202	3006	581aa	ENSBTAP00000074271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1NNC9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000109265.1	TTC39A-201	2914	546aa	ENSBTAP00000087278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000127521.1	TTC39A-205	2717	571aa	ENSBTAP00000082793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000096866.1	TTC39A-206	2705	567aa	ENSBTAP00000077314.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000119923.1	TTC39A-204	2656	530aa	ENSBTAP00000076489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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