Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Biological process
- GO: Molecular function
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LRRTM4 ENSBTAG00000000374

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Description

leucine rich repeat transmembrane neuronal 4 [Source:VGNC Symbol;Acc:VGNC:59345]

Location

Primary_assembly 11: 58,509,703-59,504,507 forward strand.

ARS-UCD1.3:CM008178.2

About this gene

This gene has 4 transcripts (splice variants), 416 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000067649.2	LRRTM4-203	1776	591aa	ENSBTAP00000062444.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MEA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000132944.1	LRRTM4-204	2325	531aa	ENSBTAP00000081153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000133170.1	LRRTM4-201	2221	571aa	ENSBTAP00000081577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000000484.5	LRRTM4-202	2180	590aa	ENSBTAP00000000484.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MEA4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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