Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ENSSSCG00000038947

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Description

heteroous nuclear ribonucleoprotein C [Source:NCBI gene (formerly Entrezgene);Acc:100626496]

Location

Primary_assembly 7: 77,921,145-77,973,078 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 5 transcripts (splice variants), 196 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000023644.4	-	1810	307aa	ENSSSCP00000024485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0QI17 I3LK71	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000104485.1	-	5011	289aa	ENSSSCP00000080424.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0IWG2 A0A8W4FM53	-
ENSSSCT00000065586.1	-	2854	232aa	ENSSSCP00000031967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UY66 A0A8D1UR77	-
ENSSSCT00000060069.3	-	1541	299aa	ENSSSCP00000040916.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AA79	-
ENSSSCT00000055818.3	-	1377	294aa	ENSSSCP00000044204.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AJY0 A0A8D0QDA8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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