Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SMARCAL1 ENSSSCG00000035501

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Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [Source:VGNC Symbol;Acc:VGNC:95507]

Location

Primary_assembly 15: 118,627,497-118,688,396 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 2 transcripts (splice variants), 194 orthologues and 30 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000106589.2	SMARCAL1-201	3555	952aa	ENSSSCP00000079237.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FLQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000103179.2	SMARCAL1-202	3546	891aa	ENSSSCP00000077918.2	Nonsense mediated decay	A0A8W4FHX8	-

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Summary

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