Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PRPF6 ENSSSCG00000029119

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Description

pre-mRNA processing factor 6 [Source:VGNC Symbol;Acc:VGNC:95677]

Location

Primary_assembly 17: 62,815,085-62,858,382 forward strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 4 transcripts (splice variants), 208 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000051632.3	PRPF6-202	4653	1150aa	ENSSSCP00000047344.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ATC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000056052.3	PRPF6-203	4416	1071aa	ENSSSCP00000034664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZT56 A0A8D1TXG5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000075098.2	PRPF6-204	4413	1070aa	ENSSSCP00000062491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QD12 A0A8D1PTP5	-
ENSSSCT00000022436.4	PRPF6-201	3725	907aa	ENSSSCP00000020060.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1PU26 I3L7Q4	-

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Summary

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