Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: LSM14B ENSSSCG00000026052

.

Description

LSM family member 14B [Source:VGNC Symbol;Acc:VGNC:95691]

Location

Primary_assembly 17: 61,553,971-61,564,431 forward strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 3 transcripts (splice variants), 280 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000042965.3	LSM14B-203	2551	424aa	ENSSSCP00000053189.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BAU6 A0A8D1NVC1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000038192.3	LSM14B-202	2392	385aa	ENSSSCP00000057447.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BMP1 A0A8D0T2Y9	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000062294.2	LSM14B-201	825	221aa	ENSSSCP00000034933.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZTF5 A0A4X1UVQ5	-

.

Summary

.

.