Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPRIN1 ENSSSCG00000013305

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Description

cell cycle associated protein 1 [Source:VGNC Symbol;Acc:VGNC:86178]

Location

Primary_assembly 2: 26,830,267-26,875,357 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 281 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000063553.3	CAPRIN1-203	5538	709aa	ENSSSCP00000056071.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SSD2 F1SGS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000051606.3	CAPRIN1-202	3359	694aa	ENSSSCP00000054708.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BDU1 A0A8D0W7S2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000053740.2	CAPRIN1-201	2177	659aa	ENSSSCP00000034656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZSM6 A0A4X1ST24	-

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Summary

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