Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CPSF7 ENSSSCG00000013083

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Description

cleavage and polyadenylation specific factor 7 [Source:VGNC Symbol;Acc:VGNC:86963]

Location

Primary_assembly 2: 10,087,632-10,115,076 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 196 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000060491.3	CPSF7-202	3054	471aa	ENSSSCP00000041570.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0JFP6 F1RKQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000053786.3	CPSF7-201	3578	462aa	ENSSSCP00000034831.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZTD7 A0A8D0MXZ5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000091942.1	CPSF7-203	460	101aa	ENSSSCP00000078709.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0N221 A0A8D1J2A8	-

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Summary

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