Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: EEFSEC ENSSSCG00000011619

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Description

eukaryotic elongation factor, selenocysteine-tRNA specific [Source:VGNC Symbol;Acc:VGNC:87558]

Location

Primary_assembly 13: 72,020,305-72,195,930 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 9 transcripts (splice variants), 194 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000042022.3	EEFSEC-204	1965	646aa	ENSSSCP00000043782.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AIF7 A0A8D0UC11	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000088166.2	EEFSEC-209	7201	557aa	ENSSSCP00000067316.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QT41	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000074152.1	EEFSEC-203	2794	604aa	ENSSSCP00000066143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QW37 A0A8D0PZ00	-
ENSSSCT00000100408.1	EEFSEC-207	2777	591aa	ENSSSCP00000081062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FNI9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000101601.1	EEFSEC-208	2036	589aa	ENSSSCP00000079822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1WZ63 A0A8W4FKT5	-
ENSSSCT00000031616.4	EEFSEC-205	1929	537aa	ENSSSCP00000024670.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1WYS5 I3LKQ5	-
ENSSSCT00000099614.1	EEFSEC-201	1710	561aa	ENSSSCP00000078075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FFQ6	-
ENSSSCT00000012716.4	EEFSEC-202	1674	549aa	ENSSSCP00000012382.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1X328 F1SPF7	-
ENSSSCT00000042384.3	EEFSEC-206	1473	370aa	ENSSSCP00000041661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ACC5 A0A8D1E9Z2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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