Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: AQR ENSSSCG00000004802

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Description

aquarius intron-binding spliceosomal factor [Source:VGNC Symbol;Acc:VGNC:85437]

Location

Primary_assembly 1: 136,121,111-136,233,825 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants), 205 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000040622.2	AQR-202	5264	1492aa	ENSSSCP00000031234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UIY4 A0A8D1QXQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000086064.1	AQR-203	5228	1480aa	ENSSSCP00000072198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4Q8	-
ENSSSCT00000005301.4	AQR-204	5177	1463aa	ENSSSCP00000005171.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UNE5 A0A8D1M7D4	-
ENSSSCT00000072779.1	AQR-201	4956	1485aa	ENSSSCP00000071324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R2K0 A0A8D1M4I3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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