Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SYNCRIP ENSSSCG00000004294

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Description

synaptotagmin binding cytoplasmic RNA interacting protein [Source:VGNC Symbol;Acc:VGNC:103185]

Location

Primary_assembly 1: 54,563,114-54,598,407 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 7 transcripts (splice variants), 281 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000004748.4	SYNCRIP-204	2513	623aa	ENSSSCP00000004639.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VEP2 A0A8D1EBC8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000055678.3	SYNCRIP-205	6329	562aa	ENSSSCP00000055565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VIP2 A0A8D1YQZ3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000098614.1	SYNCRIP-206	6215	524aa	ENSSSCP00000080083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FMF3	-
ENSSSCT00000105495.1	SYNCRIP-207	6038	465aa	ENSSSCP00000079723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FLD9	-
ENSSSCT00000104887.1	SYNCRIP-202	2328	616aa	ENSSSCP00000075647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1E7I1 A0A8W4F8P8	-
ENSSSCT00000063076.3	SYNCRIP-203	2283	601aa	ENSSSCP00000046283.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AQG4 A0A8D0KEH3	-
ENSSSCT00000097449.1	SYNCRIP-201	1491	337aa	ENSSSCP00000077310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FD37	-

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Summary

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