Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: VARS2 ENSSSCG00000001384

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Description

valyl-tRNA synthetase 2, mitochondrial [Source:VGNC Symbol;Acc:VGNC:109436]

Location

Primary_assembly 7: 23,404,429-23,416,442 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 7 transcripts (splice variants), 181 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000001506.6	VARS2-207	3896	1062aa	ENSSSCP00000001464.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RU69	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107645.1	VARS2-204	3569	1062aa	ENSSSCP00000082039.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107649.1	VARS2-205	3394	1027aa	ENSSSCP00000082043.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107650.1	VARS2-206	3817	112aa	ENSSSCP00000082044.1	Nonsense mediated decay	-	-
ENSSSCT00000107647.1	VARS2-202	3631	179aa	ENSSSCP00000082041.1	Nonsense mediated decay	-	-
ENSSSCT00000107646.1	VARS2-201	3576	293aa	ENSSSCP00000082040.1	Nonsense mediated decay	-	-
ENSSSCT00000107648.1	VARS2-203	3460	624aa	ENSSSCP00000082042.1	Nonsense mediated decay	-	-

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Summary

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