Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: FOXJ3 ENSSSCG00000023266

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Description

forkhead box J3 [Source:VGNC Symbol;Acc:VGNC:88213]

Location

Primary_assembly 6: 168,994,494-169,135,040 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 4 transcripts (splice variants), 158 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038171.3	FOXJ3-204	5071	622aa	ENSSSCP00000039942.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A806 A0A4X1W6P9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000024723.4	FOXJ3-202	4723	588aa	ENSSSCP00000028094.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W6Q4 I3LVE2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000031628.4	FOXJ3-201	3344	594aa	ENSSSCP00000020810.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1QIN5 I3L9U6	-
ENSSSCT00000076859.1	FOXJ3-203	3281	213aa	ENSSSCP00000071619.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RIW6 A0A8D1QQ30	-

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Gene tree

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