Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HDAC10 ENSSSCG00000000971

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Description

histone deacetylase 10 [Source:VGNC Symbol;Acc:VGNC:88811]

Location

Primary_assembly 5: 439,808-445,334 forward strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 5 transcripts (splice variants), 182 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000030674.4	HDAC10-201	2542	671aa	ENSSSCP00000024529.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UPS6 I3LKB5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000001061.4	HDAC10-202	2753	571aa	ENSSSCP00000001039.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0WIW4 F1RXT2	-
ENSSSCT00000029634.3	HDAC10-203	2563	647aa	ENSSSCP00000022067.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UQB6 I3LDD6	-
ENSSSCT00000081871.2	HDAC10-205	2562	654aa	ENSSSCP00000067893.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RBB1	-
ENSSSCT00000054587.3	HDAC10-204	2533	644aa	ENSSSCP00000053268.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B9U5	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data