Transcript: ENSRNOT00000007299.7 Rpap1-201

Description

RNA polymerase II associated protein 1 [Source:RGD Symbol;Acc:1590891]

Location

About this transcript

This transcript has 27 exons, is annotated with 22 domains and features, is associated with 162 variant alleles and maps to 218 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000007299.7	Rpap1-201	4522	1400aa	ENSRNOP00000007299.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3T1I9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000112463.1	Rpap1-202	4435	1371aa	ENSRNOP00000095239.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GL25	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 27, Coding exons: 24, Transcript length: 4,522 bps, Translation length: 1,400 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3T1I9

Version

ENSRNOT00000007299.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.