Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Skint1 ENSRNOG00000043194

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Description

selection and upkeep of intraepithelial T cells 1 [Source:RGD Symbol;Acc:1587579]

Gene Synonyms

LOC689801

Location

Primary_assembly 5: 132,014,905-132,042,543 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 2 transcripts (splice variants), 41 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000064863.4	Skint1-201	1201	377aa	ENSRNOP00000060977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2ZEZ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000087012.3	Skint1-202	937	289aa	ENSRNOP00000075376.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KAF2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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