Summary
- Splice variants
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Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: Rnf170 ENSRNOG00000069749

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Description

ring finger protein 170 [Source:RGD Symbol;Acc:1590842]

Gene Synonyms

LOC364654

Location

Primary_assembly 16: 72,631,638-72,656,469 reverse strand.

GRCr8:CM070406.1

About this gene

This gene has 2 transcripts (splice variants), 210 orthologues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000110314.2	Rnf170-202	3856	286aa	ENSRNOP00000078493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKY1 A6IVZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000107367.2	Rnf170-201	3516	239aa	ENSRNOP00000077528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y6F4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data