Gene: Ttc39a ENSRNOG00000047573

Description

tetratricopeptide repeat domain 39A [Source:RGD Symbol;Acc:1311126]

Gene Synonyms

LOC108348114, LOC298366, RGD1311126

Location

Primary_assembly 5: 129,380,753-129,433,372 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 7 transcripts (splice variants), 205 orthologues, 3 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000013459.8	Ttc39a-201	2605	581aa	ENSRNOP00000013459.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7F7D5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000159369.1	Ttc39a-207	2721	578aa	ENSRNOP00000103264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000128949.1	Ttc39a-205	2703	572aa	ENSRNOP00000099685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000144812.1	Ttc39a-206	2678	536aa	ENSRNOP00000101187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000072692.5	Ttc39a-204	2603	574aa	ENSRNOP00000063929.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R3L2	-
ENSRNOT00000057729.6	Ttc39a-202	2158	524aa	ENSRNOP00000054540.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5DEK2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000072396.4	Ttc39a-203	2076	578aa	ENSRNOP00000067106.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0RC03	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Ttc39a ENSRNOG00000047573

Strains

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Gene: Ttc39a ENSRNOG00000047573

Strains

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