Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SQSTM1 ENSPTRG00000017626

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Description

sequestosome 1 [Source:VGNC Symbol;Acc:VGNC:4180]

Location

Chromosome 5: 180,380,830-180,395,659 forward strand.

Pan_tro_3.0:CM000319.3

About this gene

This gene has 3 transcripts (splice variants) and 209 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000055318.5	SQSTM1-201	2155	440aa	ENSPTRP00000047790.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XMZ4 H2R540	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000093258.1	SQSTM1-203	1209	402aa	ENSPTRP00000082273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T090	-
ENSPTRT00000109936.1	SQSTM1-202	222	73aa	ENSPTRP00000091655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TRQ9 A0A6D2WPW2	-

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Summary

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