Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SMARCA1 ENSPTRG00000049876

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Description

SNF2 related chromatin remodeling ATPase 1 [Source:UniProtKB Gene Name;Acc:A0A2I3SZ39]

Location

Chromosome X: 129,165,740-129,246,877 reverse strand.

Pan_tro_3.0:CM000336.3

About this gene

This gene has 3 transcripts (splice variants), 208 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000089066.1	SMARCA1-203	3652	1111aa	ENSPTRP00000082274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SZ39	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000090875.1	SMARCA1-201	4097	1042aa	ENSPTRP00000069852.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7AK55	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000096183.1	SMARCA1-202	3213	1070aa	ENSPTRP00000091660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W3Q2 K7DQN1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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