Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LSM4 ENSPTRG00000031470

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Description

LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:VGNC Symbol;Acc:VGNC:55586]

Location

Chromosome 19: 19,354,612-19,371,048 reverse strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 4 transcripts (splice variants), 192 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000100313.1	LSM4-204	715	238aa	ENSPTRP00000091603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TQR7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000084339.1	LSM4-201	1233	139aa	ENSPTRP00000064616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W5G4 K6ZIP9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000087097.1	LSM4-203	378	125aa	ENSPTRP00000080955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SVG6 A0A6D2WRB0	-
ENSPTRT00000060623.3	LSM4-202	366	121aa	ENSPTRP00000054026.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2RAK7	-

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Summary

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