Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SLIRP ENSPTRG00000030691

.

Description

SRA stem-loop interacting RNA binding protein [Source:VGNC Symbol;Acc:VGNC:12536]

Location

Chromosome 14: 62,290,394-62,343,558 forward strand.

Pan_tro_3.0:CM000328.3

About this gene

This gene has 4 transcripts (splice variants) and 180 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000081605.1	SLIRP-204	375	124aa	ENSPTRP00000086876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TDC9 A0A6D2WFC1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000059395.4	SLIRP-201	420	106aa	ENSPTRP00000052554.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WMJ8 K7BR91	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000103728.1	SLIRP-203	297	98aa	ENSPTRP00000089819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TKR1 A0A6D2W5Z5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000093843.1	SLIRP-202	279	93aa	ENSPTRP00000074088.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SAK5 A0A6D2WQ03	-

.

Summary

.

.