plectin [Source:VGNC Symbol;Acc:VGNC:821]
Chromosome 8: 146,690,316-146,749,460 reverse strand.
Pan_tro_3.0:CM000322.4
This gene has 8 transcripts (splice variants), 154 orthologues and 38 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSPTRT00000038241.5 | PLEC-204 | 14055 | 4684aa | ENSPTRP00000035356.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6D2WLA0 H2QWV3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSPTRT00000092373.1 | PLEC-201 | 13725 | 4574aa | ENSPTRP00000062371.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RCJ4 A0A6D2Y4W1 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000104476.1 | PLEC-207 | 13656 | 4551aa | ENSPTRP00000083817.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3T3K9 A0A6D2Y1C7 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000081093.1 | PLEC-206 | 13644 | 4547aa | ENSPTRP00000066524.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RPA6 A0A6D2XAK8 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000103822.1 | PLEC-208 | 13644 | 4547aa | ENSPTRP00000092798.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TUC4 A0A6D2XC88 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000084157.1 | PLEC-202 | 13617 | 4538aa | ENSPTRP00000088096.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TFS7 A0A6D2W3P3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000091956.1 | PLEC-203 | 13578 | 4525aa | ENSPTRP00000093047.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TVL9 A0A6D2W564 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000100244.1 | PLEC-205 | 13548 | 4515aa | ENSPTRP00000084517.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3T5M0 A0A6D2X232 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
