Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
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Gene: VCPIP1 ENSPTRG00000020309

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Description

valosin containing protein interacting protein 1 [Source:VGNC Symbol;Acc:VGNC:10487]

Location

Chromosome 8: 67,738,628-67,771,388 reverse strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 3 transcripts (splice variants) and 208 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000037613.4	VCPIP1-201	3959	1224aa	ENSPTRP00000034763.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XKC8 H2QW91	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101770.1	VCPIP1-203	2781	926aa	ENSPTRP00000090656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TNZ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000111199.1	VCPIP1-202	1707	568aa	ENSPTRP00000077156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SJS5	-

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Summary

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