Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LSM1 ENSPTRG00000020169

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Description

LSM1 homolog, mRNA degradation associated [Source:VGNC Symbol;Acc:VGNC:1168]

Location

Chromosome 8: 37,926,058-37,939,448 reverse strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 2 transcripts (splice variants), 217 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000037361.4	LSM1-201	1148	133aa	ENSPTRP00000053200.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W0U6 H2R9V1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000077602.1	LSM1-202	135	44aa	ENSPTRP00000076046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SGD8 A0A6D2WBT4	-

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Summary

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