Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SCAF8 ENSPTRG00000018727

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Description

SR-related CTD associated factor 8 [Source:VGNC Symbol;Acc:VGNC:9523]

Location

Chromosome 6: 158,915,812-159,016,388 forward strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 5 transcripts (splice variants), 189 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000086887.1	SCAF8-204	4059	1352aa	ENSPTRP00000091998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TRZ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000108835.1	SCAF8-201	5004	1271aa	ENSPTRP00000081571.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WEK0 K7DIR5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000104958.1	SCAF8-202	4741	1349aa	ENSPTRP00000087690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TER0 A0A6D2X855	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000034577.6	SCAF8-203	4703	1337aa	ENSPTRP00000031961.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X8L7 H2QTY0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000080739.1	SCAF8-205	3813	1270aa	ENSPTRP00000078473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SNH1	-

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Summary

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