Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TSEN2 ENSPTRG00000014633

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Description

tRNA splicing endonuclease subunit 2 [Source:VGNC Symbol;Acc:VGNC:12218]

Location

Chromosome 3: 12,773,101-12,819,701 forward strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 4 transcripts (splice variants), 190 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000102850.1	TSEN2-201	2035	465aa	ENSPTRP00000070277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S008 A0A6D2VS62	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000027384.6	TSEN2-202	2307	439aa	ENSPTRP00000025249.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XYR6 H2QM28	-
ENSPTRT00000082226.1	TSEN2-203	1281	426aa	ENSPTRP00000085883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T9L4	-
ENSPTRT00000092640.1	TSEN2-204	1221	406aa	ENSPTRP00000091677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TR36 A0A6D2Y4A1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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