Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: U2AF1 ENSPTRG00000013952

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Description

U2 small nuclear RNA auxiliary factor 1 [Source:UniProtKB Gene Name;Acc:K7CGB8]

Location

Chromosome 21: 29,643,878-29,658,438 reverse strand.

Pan_tro_3.0:CM004190.1

About this gene

This gene has 4 transcripts (splice variants), 288 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000076726.1	U2AF1-203	726	241aa	ENSPTRP00000091924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TRQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000007520.3	U2AF1-201	976	240aa	ENSPTRP00000006938.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X3U9 H2Q4C7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000108244.1	U2AF1-202	976	240aa	ENSPTRP00000080448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W3P4 K7CGB8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000079632.1	U2AF1-204	690	229aa	ENSPTRP00000070759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TFJ8	-

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Summary

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