Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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ID History
- Gene history

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Gene: PAF1 ENSPTRG00000010964

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Description

PAF1 homolog, Paf1/RNA polymerase II complex component [Source:NCBI gene (formerly Entrezgene);Acc:456396]

Location

Chromosome 19: 41,400,421-41,405,766 reverse strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 3 transcripts (splice variants) and 184 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000109638.1	PAF1-202	2026	533aa	ENSPTRP00000081951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WXT0 G2HE44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000109429.1	PAF1-201	1853	487aa	ENSPTRP00000078949.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SPJ7 A0A6D2Y6D7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000020318.3	PAF1-203	1536	511aa	ENSPTRP00000018794.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QGA6	-

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Summary

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