Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RAB5C ENSPTRG00000009194

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Description

RAB5C, member RAS onco family [Source:VGNC Symbol;Acc:VGNC:14189]

Location

Chromosome 17: 15,437,899-15,467,789 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 3 transcripts (splice variants), 273 orthologues and 69 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000077137.1	RAB5C-203	750	249aa	ENSPTRP00000078560.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SNM2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000016919.3	RAB5C-201	1659	216aa	ENSPTRP00000015661.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G2HJF5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000106038.1	RAB5C-202	648	215aa	ENSPTRP00000091069.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TPB7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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