Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: KARS1 ENSPTRG00000008364

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Description

lysyl-tRNA synthetase 1 [Source:VGNC Symbol;Acc:VGNC:13722]

Gene Synonyms

KARS

Location

Chromosome 16: 66,623,177-66,643,138 reverse strand.

Pan_tro_3.0:CM000330.3

About this gene

This gene has 6 transcripts (splice variants), 219 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106635.1	KARS1-204	1890	629aa	ENSPTRP00000069187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RWT8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000015420.5	KARS1-202	2269	625aa	ENSPTRP00000014280.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6R832 H2QBJ3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000015419.3	KARS1-201	2065	597aa	ENSPTRP00000014279.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6RD16 H2QBJ2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000105818.1	KARS1-203	1788	595aa	ENSPTRP00000079741.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SRU4	-
ENSPTRT00000101144.1	KARS1-206	375	124aa	ENSPTRP00000088854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TI03 A0A5S6R6N6	-
ENSPTRT00000093544.1	KARS1-205	204	67aa	ENSPTRP00000077580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SM47 A0A5S6R9I7	-

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Summary

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