Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: USB1 ENSPTRG00000008172

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Description

U6 snRNA biosis phosphodiesterase 1 [Source:VGNC Symbol;Acc:VGNC:9399]

Location

Chromosome 16: 48,689,897-48,713,363 forward strand.

Pan_tro_3.0:CM000330.3

About this gene

This gene has 3 transcripts (splice variants) and 193 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000077968.1	USB1-202	2879	247aa	ENSPTRP00000087910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VTU2 K7BF71	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000109128.1	USB1-201	3661	186aa	ENSPTRP00000091714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TR34 A0A6D2XG11	-
ENSPTRT00000015070.4	USB1-203	2935	214aa	ENSPTRP00000013956.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VTW2 H2QB80	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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