Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ARID4A ENSPTRG00000006393

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Description

AT-rich interaction domain 4A [Source:VGNC Symbol;Acc:VGNC:3480]

Location

Chromosome 14: 42,549,231-42,624,564 forward strand.

Pan_tro_3.0:CM000328.3

About this gene

This gene has 3 transcripts (splice variants), 215 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000096640.1	ARID4A-203	3780	1259aa	ENSPTRP00000070743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S2D5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000046402.5	ARID4A-201	5894	1257aa	ENSPTRP00000045942.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WMD7 H2R3R4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000093159.1	ARID4A-202	5687	1188aa	ENSPTRP00000073943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8PHV6 A0A6D2X3P8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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