Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: NOVA1 ENSPTRG00000006229

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Description

NOVA alternative splicing regulator 1 [Source:VGNC Symbol;Acc:VGNC:10309]

Location

Chromosome 14: 10,139,440-10,295,609 reverse strand.

Pan_tro_3.0:CM000328.3

About this gene

This gene has 5 transcripts (splice variants), 296 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000093973.1	NOVA1-202	1524	507aa	ENSPTRP00000075574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SEW0 A0A6D2WT72	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000011425.4	NOVA1-201	5033	429aa	ENSPTRP00000010571.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q843	-
ENSPTRT00000088680.1	NOVA1-203	1452	483aa	ENSPTRP00000089436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TJN7 A0A6D2XCV4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000099505.1	NOVA1-204	546	181aa	ENSPTRP00000080315.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y1A2 K7DTK6	-
ENSPTRT00000105266.1	NOVA1-205	366	121aa	ENSPTRP00000065409.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RL37 A0A6D2WWG4	-

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Summary

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