Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ATP2A2 ENSPTRG00000005437

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Description

ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 [Source:VGNC Symbol;Acc:VGNC:8342]

Location

Chromosome 12: 113,325,416-113,395,833 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 4 transcripts (splice variants), 175 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000009983.6	ATP2A2-201	4641	1042aa	ENSPTRP00000009231.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A663DGQ2 K7BZQ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000104963.1	ATP2A2-202	4340	997aa	ENSPTRP00000084896.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A663D6S6 K7DK19	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000102172.1	ATP2A2-203	3111	1036aa	ENSPTRP00000084628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T6X5	-
ENSPTRT00000078799.1	ATP2A2-204	696	231aa	ENSPTRP00000066641.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RPL0	-

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Summary

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