Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: CPSF6 ENSPTRG00000005205

.

Description

cleavage and polyadenylation specific factor 6 [Source:VGNC Symbol;Acc:VGNC:5347]

Location

Chromosome 12: 71,355,511-71,390,812 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 5 transcripts (splice variants), 193 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000009565.6	CPSF6-201	6771	589aa	ENSPTRP00000008836.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q6F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000089284.1	CPSF6-202	6626	552aa	ENSPTRP00000077789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SL66	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000086406.1	CPSF6-204	1428	475aa	ENSPTRP00000080397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3STU4	-
ENSPTRT00000109520.1	CPSF6-203	327	108aa	ENSPTRP00000064972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RJY2	-
ENSPTRT00000085178.1	CPSF6-205	171	56aa	ENSPTRP00000072060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S523 A0A6D2WR72	-

.

Summary

.

.