Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: PYM1 ENSPTRG00000005067

.

Description

PYM homolog 1, exon junction complex associated factor [Source:VGNC Symbol;Acc:VGNC:5559]

Location

Chromosome 12: 33,925,909-33,961,999 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 7 transcripts (splice variants) and 193 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000083702.1	PYM1-202	1256	204aa	ENSPTRP00000088856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XL96 K7B106	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000064263.2	PYM1-205	1169	203aa	ENSPTRP00000055814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WII2 H2RBK0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000100997.1	PYM1-207	615	204aa	ENSPTRP00000079685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3ST03	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000106184.1	PYM1-206	609	202aa	ENSPTRP00000076485.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SHX3	-
ENSPTRT00000105750.1	PYM1-204	234	77aa	ENSPTRP00000081845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SXX8 A0A6D2X264	-
ENSPTRT00000082169.1	PYM1-201	138	45aa	ENSPTRP00000063728.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RH78 A0A6D2Y0J1	-
ENSPTRT00000107492.1	PYM1-203	135	44aa	ENSPTRP00000075532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SF66 A0A6D2WJ73	-

.

Summary

.

.