Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPRIN2 ENSPTRG00000004802

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Description

caprin family member 2 [Source:VGNC Symbol;Acc:VGNC:5315]

Location

Chromosome 12: 59,970,189-60,016,181 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 4 transcripts (splice variants), 215 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000082978.1	CAPRIN2-204	4338	1077aa	ENSPTRP00000089326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TJB8 A0A6D2WQ83	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000008872.4	CAPRIN2-202	4529	960aa	ENSPTRP00000008199.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XSF9 K7BZI0	-
ENSPTRT00000090175.1	CAPRIN2-203	4364	905aa	ENSPTRP00000085957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T9Q1 A0A6D2Y2Z2	-
ENSPTRT00000101322.1	CAPRIN2-201	3938	1045aa	ENSPTRP00000083447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T2J0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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