Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN5 ENSPTRG00000003430

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Description

protein tyrosine phosphatase non-receptor type 5 [Source:VGNC Symbol;Acc:VGNC:7674]

Location

Chromosome 11: 18,576,142-18,640,154 reverse strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 5 transcripts (splice variants), 202 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000006475.4	PTPN5-201	3991	565aa	ENSPTRP00000005972.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y225 H2Q3A1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000097713.1	PTPN5-204	1626	541aa	ENSPTRP00000088872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TI07	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000109263.1	PTPN5-205	1572	523aa	ENSPTRP00000069871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RYR6	-
ENSPTRT00000098097.1	PTPN5-203	1134	377aa	ENSPTRP00000073326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S924	-
ENSPTRT00000104206.1	PTPN5-202	513	170aa	ENSPTRP00000078068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SMB5	-

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Summary

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