Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MUC1 ENSPTRG00000001412

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Description

mucin 1, cell surface associated [Source:VGNC Symbol;Acc:VGNC:84820]

Location

Chromosome 1: 133,273,567-133,280,834 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 8 transcripts (splice variants) and 95 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000002594.7	MUC1-203	1455	484aa	ENSPTRP00000002386.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YB31 H2Q072	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000082412.1	MUC1-202	1141	239aa	ENSPTRP00000063785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RGJ6 A0A6D2Y320	-
ENSPTRT00000085193.1	MUC1-201	1062	212aa	ENSPTRP00000074651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SCE3	-
ENSPTRT00000104946.1	MUC1-206	807	268aa	ENSPTRP00000076956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SIS2 A0A6D2W010	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000080506.1	MUC1-204	726	241aa	ENSPTRP00000084723.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T768 A0A6D2X2Q1	-
ENSPTRT00000088313.1	MUC1-207	711	198aa	ENSPTRP00000081877.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SZ59 A0A6D2WA89	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000097806.1	MUC1-205	534	177aa	ENSPTRP00000090481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TMK7	-
ENSPTRT00000080346.1	MUC1-208	408	135aa	ENSPTRP00000064443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RID1 A0A6D2Y3F6	-

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Summary

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