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BlastView
Ensembl release 49 -
Mar 2008
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Important Notice
We now used
BLAT
as our default DNA search. This will make your query faster.
Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Aedes_aegypti
Anopheles_gambiae
Bos_taurus
Caenorhabditis_elegans
Canis_familiaris
Cavia_porcellus
Ciona_intestinalis
Ciona_savignyi
Danio_rerio
Dasypus_novemcinctus
Drosophila_melanogaster
Echinops_telfairi
Equus_caballus
Erinaceus_europaeus
Felis_catus
Gallus_gallus
Gasterosteus_aculeatus
Homo_sapiens
Loxodonta_africana
Macaca_mulatta
Microcebus_murinus
Monodelphis_domestica
Mus_musculus
Myotis_lucifugus
Ochotona_princeps
Ornithorhynchus_anatinus
Oryctolagus_cuniculus
Oryzias_latipes
Otolemur_garnettii
Pan_troglodytes
Pongo_pygmaeus
Rattus_norvegicus
Saccharomyces_cerevisiae
Sorex_araneus
Spermophilus_tridecemlineatus
Takifugu_rubripes
Tetraodon_nigroviridis
Tupaia_belangeri
Xenopus_tropicalis
dna database
Ensembl Non-coding RNA genes
Genomic sequence
Genomic sequence (masked)
cDNAs
cDNAs (known only but not CCDS)
cDNAs (novel only)
cDNAs (pseudo genes)
Ab-initio cDNAs (Genscan/SNAP)
peptide database
Peptides
Peptides (known only but not CCDS)
Peptides (novel only)
Ab-initio Peptides (Genscan/SNAP)
Select the Search Tool
BLASTN
BLASTP
BLASTX
BLAT
SSAHA2
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl databases, offering access to both BLAST and SSAHA programs.
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We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
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