Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: Alkbh1 MGP_PahariEiJ_G0029753

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Description

alkB homolog 1, histone H2A dioxygenase [Source:MGI Symbol;Acc:MGI:2384034]

Location

Chromosome 7: 82,595,466-82,612,703 reverse strand.

PAHARI_EIJ_v1.1:LT608288.1

About this gene

This gene has 11 transcripts (splice variants) and 207 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0083105.1	Alkbh1-202	3919	389aa	MGP_PahariEiJ_P0083105	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0083110.1	Alkbh1-207	541	179aa	MGP_PahariEiJ_P0083110	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0083108.1	Alkbh1-205	2083	68aa	MGP_PahariEiJ_P0083108	Nonsense mediated decay	-
MGP_PahariEiJ_T0083107.1	Alkbh1-204	1947	68aa	MGP_PahariEiJ_P0083107	Nonsense mediated decay	-
MGP_PahariEiJ_T0083106.1	Alkbh1-203	1811	200aa	MGP_PahariEiJ_P0083106	Nonsense mediated decay	-
MGP_PahariEiJ_T0083112.1	Alkbh1-209	1308	78aa	MGP_PahariEiJ_P0083112	Nonsense mediated decay	-
MGP_PahariEiJ_T0083109.1	Alkbh1-206	1045	101aa	MGP_PahariEiJ_P0083109	Nonsense mediated decay	-
MGP_PahariEiJ_T0083104.1	Alkbh1-201	3453	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0083111.1	Alkbh1-208	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0083113.1	Alkbh1-210	1411	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0083114.1	Alkbh1-211	1239	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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