Description
LIM and calponin homology domains 1 [Source:NCBI gene;Acc:110330433]
Location
Chromosome 13: 57,743,774-58,059,618 forward strand.
PAHARI_EIJ_v1.1:LT608299.1
About this gene
This gene has 17 transcripts (splice variants), 301 orthologues and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | Flags |
|---|---|---|---|---|---|---|
| MGP_PahariEiJ_T0031620.1 | - | 6123 | 1087aa | MGP_PahariEiJ_P0031620 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| MGP_PahariEiJ_T0031623.1 | - | 5919 | 901aa | MGP_PahariEiJ_P0031623 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_PahariEiJ_T0031616.1 | - | 5202 | 1057aa | MGP_PahariEiJ_P0031616 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_PahariEiJ_T0031618.1 | - | 5064 | 1068aa | MGP_PahariEiJ_P0031618 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_PahariEiJ_T0031627.1 | - | 879 | 268aa | MGP_PahariEiJ_P0031627 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_PahariEiJ_T0031625.1 | - | 851 | 237aa | MGP_PahariEiJ_P0031625 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_PahariEiJ_T0031621.1 | - | 520 | 29aa | MGP_PahariEiJ_P0031621 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - |
| MGP_PahariEiJ_T0031631.1 | - | 434 | 60aa | MGP_PahariEiJ_P0031631 | Nonsense mediated decay | - |
| MGP_PahariEiJ_T0031619.1 | - | 361 | 83aa | MGP_PahariEiJ_P0031619 | Nonsense mediated decay | - |
| MGP_PahariEiJ_T0031622.1 | - | 3356 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - |
| MGP_PahariEiJ_T0031630.1 | - | 626 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - |
| MGP_PahariEiJ_T0031628.1 | - | 624 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - |
| MGP_PahariEiJ_T0031617.1 | - | 2499 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_PahariEiJ_T0031624.1 | - | 2459 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_PahariEiJ_T0031615.1 | - | 1018 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_PahariEiJ_T0031626.1 | - | 790 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
| MGP_PahariEiJ_T0031629.1 | - | 680 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - |
