Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Pif1 MGP_PahariEiJ_G0015231

.

Description

PIF1 5'-to-3' DNA helicase [Source:NCBI gene;Acc:110327982]

Location

Chromosome 10: 60,524,501-60,533,099 forward strand.

PAHARI_EIJ_v1.1:LT608289.1

About this gene

This gene has 8 transcripts (splice variants) and 196 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0024012.1	Pif1-205	3702	650aa	MGP_PahariEiJ_P0024012	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0024008.1	Pif1-201	3412	650aa	MGP_PahariEiJ_P0024008	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0024014.1	Pif1-207	3326	650aa	MGP_PahariEiJ_P0024014	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0024015.1	Pif1-208	743	157aa	MGP_PahariEiJ_P0024015	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0024009.1	Pif1-202	372	9aa	MGP_PahariEiJ_P0024009	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0024010.1	Pif1-203	3742	411aa	MGP_PahariEiJ_P0024010	Nonsense mediated decay	-
MGP_PahariEiJ_T0024013.1	Pif1-206	3935	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0024011.1	Pif1-204	2473	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

.

Summary

.

.