Transcript: ENSMUST00000019044.8 Slc22a5-201

Description

solute carrier family 22 (organic cation transporter), member 5 [Source:MGI Symbol;Acc:MGI:1329012]

Gene Synonyms

Lstpl, Octn2

Location

Chromosome 11: 53,755,368-53,782,486 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 21 domains and features, is associated with 1700 variant alleles and maps to 264 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000018900.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000019044.8	Slc22a5-201	3062	557aa	ENSMUSP00000019044.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24687	Q5SX17 Q9Z0E8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000152084.2	Slc22a5-203	861	36aa	ENSMUSP00000115474.2	Nonsense mediated decay		F6TNN8	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000136307.2	Slc22a5-202	737	146aa	ENSMUSP00000118900.2	Nonsense mediated decay		D6RH54	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 3,062 bps, Translation length: 557 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z0E8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS24687

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000019044.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000019044.8 Slc22a5-201

Summary

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Transcript: ENSMUST00000019044.8 Slc22a5-201

Summary

About Us

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