Transcript: Mcl1-202 ENSMUST00000178686.1

Description

myeloid cell leukemia sequence 1 [Source:MGI Symbol;Acc:MGI:101769]

Synonyms

Mcl-1

Location

Chromosome 3: 95,658,857-95,660,823 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 23 domains and features, is associated with 5 variations and maps to 158 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038612 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	RefSeq	Flags
Mcl1-201	ENSMUST00000037947.14	3418	331aa	ENSMUSP00000044048	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS57236	P97287	NM_008562 NP_032588	<p>Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.</p><p>The <a href="https://genome.ucsc.edu/cgi-bin/hgc?hgsid=423831555_sqRhAapgi8atmzzBPBAz8Me5797J&c=chr14&o=94517268&t=94547548&g=wgEncodeGencodeCompV19&i=ENST00000544005.1#tsl" target="_self">Transcript Support Level</a> (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.</p>TSL:1The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic<p>PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).</p><p><a class="popup" href="/Homo_sapiens/Help/Glossary?id=521">APPRIS</a> is a system to annotate alternatively spliced transcripts based on a range of computational methods.</p>APPRIS P2
Mcl1-202	ENSMUST00000178686.1	858	285aa	ENSMUSP00000135915	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	P97287	-	<p>Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.</p><p>The <a href="https://genome.ucsc.edu/cgi-bin/hgc?hgsid=423831555_sqRhAapgi8atmzzBPBAz8Me5797J&c=chr14&o=94517268&t=94547548&g=wgEncodeGencodeCompV19&i=ENST00000544005.1#tsl" target="_self">Transcript Support Level</a> (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.</p>TSL:1The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic<p>ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.</p><p><a class="popup" href="/Homo_sapiens/Help/Glossary?id=521">APPRIS</a> is a system to annotate alternatively spliced transcripts based on a range of computational methods.</p>APPRIS ALT2

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 858 bps, Translation length: 285 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P97287

Transcript Support Level (TSL)

<p>Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.</p><p>The <a href="https://genome.ucsc.edu/cgi-bin/hgc?hgsid=423831555_sqRhAapgi8atmzzBPBAz8Me5797J&c=chr14&o=94517268&t=94547548&g=wgEncodeGencodeCompV19&i=ENST00000544005.1#tsl" target="_self">Transcript Support Level</a> (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.</p>TSL:1

Version

ENSMUST00000178686.1

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: Mcl1-202 ENSMUST00000178686.1

Summary

Transcript-based displays

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Transcript: Mcl1-202 ENSMUST00000178686.1

Summary

Transcript-based displays

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