Description

collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]

Synonyms

Col2, Col2a-1, Rgsc856, Lpk, Del1, M100856, Col2a

Location
About this transcript

This transcript has 54 exons, is annotated with 49 domains and features, is associated with 61 variations and maps to 429 oligo probes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
Col2a1-201ENSMUST00000023123.1451041487aaENSMUSP00000023123
 
Protein coding
CCDS37189P28481 NM_031163
NP_112440
TSL:1GENCODE basicAPPRIS P3
Col2a1-202ENSMUST00000088355.1148621419aaENSMUSP00000085693
 
Protein coding
CCDS49716P28481 NM_001113515
NP_001106987
TSL:1GENCODE basicAPPRIS ALT1
Col2a1-205ENSMUST00000131560.1538132aaENSMUSP00000116951
 
Protein coding
-D3Z7T2 -CDS 3' incompleteTSL:3
Col2a1-203ENSMUST00000127879.1715No protein-
 
Processed transcript
---TSL:3
Col2a1-207ENSMUST00000133488.7626No protein-
 
Processed transcript
---TSL:5
Col2a1-204ENSMUST00000128547.1491No protein-
 
Processed transcript
---TSL:3
Col2a1-208ENSMUST00000139246.7809No protein-
 
Retained intron
---TSL:5
Col2a1-206ENSMUST00000131910.7654No protein-
 
Retained intron
---TSL:5
Col2a1-209ENSMUST00000140064.1613No protein-
 
Retained intron
---TSL:2
Statistics

Exons: 54, Coding exons: 54, Transcript length: 5,104 bps, Translation length: 1,487 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS37189

Uniprot

This transcript corresponds to the following Uniprot identifiers: P28481

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000023123.14

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays