Transcript: ENSMUST00000225661.3 Trappc8-205

Description

trafficking protein particle complex 8 [Source:MGI Symbol;Acc:MGI:2443008]

Gene Synonyms

5033403J15Rik, D030074E01Rik, Trs85

Location

Chromosome 18: 20,950,280-21,029,150 reverse strand.

About this transcript

This transcript has 29 exons, is annotated with 8 domains and features, is associated with 3700 variant alleles and maps to 330 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033382.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000225661.3	Trappc8-205	5194	1437aa	ENSMUSP00000153183.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50233	A0A286YCX6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000097658.2	Trappc8-201	2703	822aa	ENSMUSP00000095262.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29087	E9PY51	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224530.2	Trappc8-203	336	112aa	ENSMUSP00000152931.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCE0	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000223584.2	Trappc8-202	4263	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225502.2	Trappc8-204	3583	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 5,194 bps, Translation length: 1,437 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50233

Version

ENSMUST00000225661.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

inferred transcript model [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000225661.3 Trappc8-205

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Transcript: ENSMUST00000225661.3 Trappc8-205

Summary

About Us

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