Transcript: ENSMUST00000221740.2 Cdcp2-202

Description

CUB domain containing protein 2 [Source:MGI Symbol;Acc:MGI:3045328]

Gene Synonyms

D030010E02Rik

Location

Chromosome 4: 106,954,905-106,970,322 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 29 domains and features, is associated with 1352 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000047636.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000221740.2	Cdcp2-202	1623	540aa	ENSMUSP00000152236.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1Y7VJ18	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000062495.3	Cdcp2-201	2611	427aa	ENSMUSP00000061401.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18430	Q8BQH6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,623 bps, Translation length: 540 residues

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000221740.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000221740.2 Cdcp2-202

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Transcript: ENSMUST00000221740.2 Cdcp2-202

Summary

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